rs29752200 SNP Detail

Summary

• ID
  rs29752200
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:109482992 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACATGTGAG CCTATTAATA
  AAAAGAAATT AATTTTCATG TTGAAAATTT AAAAATGTAG CGTCGGTGTT GTAGTGCTTT
  TCTTAACTTT TGAATGTAGT AAGTGCAATT TTCATTTAAT GTTTAACTTC ACTAATAGCC
  TCCACTTTGT CTGGGTAGAA GATGATAGCA TGCTCTGAGA CTAGCCAATT CATTTGGAAA
  Y
  GGCTTCGTGT TAGGAAAAAA GTATAGCAAA GACGATCAAG AATGTGGTTT TTATTTTGTT
  TTCTTTCTTT TTTTTTTTTT TGAAAAACTT TCTGCCTCTC CTACACTGCC ATTGATTTCG
  CCTCTGTTGC TATGATTGTA TGATTAGGAA TTTTTCTTTT AAAAATTTGG CTTCATTCTC
  AAGGCAGGTC CCATAACCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46878903	NES10702951	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs29752200					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46878903	NES10702951	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:109482992 () rs orientation: forward

Symbol	Name	Function Class
Rr583432	regulatory region 583432	1759 bp distal
Rr583433	regulatory region 583433	1217 bp distal
Tssr31300	transcription start site region 31300	1686 bp downstream
Tssr31301	transcription start site region 31301	1659 bp downstream
Tssr31302	transcription start site region 31302	1650 bp downstream
Vav3	vav 3 oncogene	Intron