rs29753016 SNP Detail

Summary

• ID
  rs29753016
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:109483025 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCATGTTG AAAATTTAAA
  AATGTAGCGT CGGTGTTGTA GTGCTTTTCT TAACTTTTGA ATGTAGTAAG TGCAATTTTC
  ATTTAATGTT TAACTTCACT AATAGCCTCC ACTTTGTCTG GGTAGAAGAT GATAGCATGC
  TCTGAGACTA GCCAATTCAT TTGGAAACGG CTTCGTGTTA GGAAAAAAGT ATAGCAAAGA
  Y
  GATCAAGAAT GTGGTTTTTA TTTTGTTTTC TTTCTTTTTT TTTTTTTTGA AAAACTTTCT
  GCCTCTCCTA CACTGCCATT GATTTCGCCT CTGTTGCTAT GATTGTATGA TTAGGAATTT
  TTCTTTTAAA AATTTGGCTT CATTCTCAAG GCAGGTCCCA TAACCATAGG ACACACAGGC
  CTAAATAGCT GCACCTGGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46878909	NES10702953	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C	C	C	C	C		C	C	C	C		C
ss320869991	CHEV_3_109378627	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29753016					SNP	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46878909	NES10702953	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:109483025 () rs orientation: forward

Symbol	Name	Function Class
Rr583432	regulatory region 583432	1792 bp distal
Rr583433	regulatory region 583433	1250 bp distal
Tssr31300	transcription start site region 31300	1719 bp downstream
Tssr31301	transcription start site region 31301	1692 bp downstream
Tssr31302	transcription start site region 31302	1683 bp downstream
Vav3	vav 3 oncogene	Intron