rs29753022 SNP Detail

Summary

• ID
  rs29753022
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:109483157 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCATGCTC TGAGACTAGC
  CAATTCATTT GGAAACGGCT TCGTGTTAGG AAAAAAGTAT AGCAAAGACG ATCAAGAATG
  TGGTTTTTAT TTTGTTTTCT TTCTTTTTTT TTTTTTTGAA AAACTTTCTG CCTCTCCTAC
  ACTGCCATTG ATTTCGCCTC TGTTGCTATG ATTGTATGAT TAGGAATTTT TCTTTTAAAA
  M
  TTTGGCTTCA TTCTCAAGGC AGGTCCCATA ACCATAGGAC ACACAGGCCT AAATAGCTGC
  ACCTGGGCTG TCACCTCCCA AGCAGTCTGG GCTTTCAAGT ATCCTTGAAA CTACCCAAAG
  CAAGTTTATT GCTGCTTGTC TGTCTACCTA GCCTCTTTCC ATCTAGGCCT AGCTAGGGAG
  GAGCCAAAGC TAACTTCCAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46878915	NES10702955	PERLEGEN	MM_PANEL2	f	SNP	A	A	C	A	A	C	A	A	A		C	A	A	C		C
ss320869992	CHEV_3_109378759	CHEVERUD	SCREENING_POP	f	SNP										C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29753022					SNP	A	A	C	A	A	C	A	A	A	C	C	A	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46878915	NES10702955	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:109483157 () rs orientation: forward

Symbol	Name	Function Class
Rr583432	regulatory region 583432	1924 bp distal
Rr583433	regulatory region 583433	1382 bp distal
Tssr31300	transcription start site region 31300	1851 bp downstream
Tssr31301	transcription start site region 31301	1824 bp downstream
Tssr31302	transcription start site region 31302	1815 bp downstream
Vav3	vav 3 oncogene	Intron