rs29753034 SNP Detail

Summary

• ID
  rs29753034
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:109479014 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAAGTCAG CTTAGTCCTA
  TTTGTTCATC ATTGGTATTA GCCTGATGCA TGCTGTACCA GACCCTTATG CCTTCCTGGA
  TTCTGTTGTT GGTAACACTC ATGGGAAGAA ATGACTGTCT TGTAGCCAGT CCTATATCTG
  TGAAGCAGGG TCTTCTCTTC CTGATATGGG AAGAGGTGTG GTTTTCTAAA GAGTGAAGTA
  K
  AAACCACAAT GCCACTGCTT CCTTTTACCA AGCACTACCC AGAGAGCCCT CAGGAAGCTG
  AGTGTCAGGA ACACTGGCAC ATGAGGCGAT TTTTCACTTT TGTGGAACAA ATAATACATT
  TAAAAAATGT TGTAAAAGAC CTGCCTCACA AGGGTATCAA AACATTCCCA TGCAAAGAAT
  CATAAAAAAG GATATTTAAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46878804	NES10703048	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	G	T	T	T	T	T	T		T	T	T	T		T
ss320869947	CHEV_3_109374616	CHEVERUD	SCREENING_POP	f	SNP											G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29753034					SNP	T	T	T	G	T	T	T	T	T	T	G	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46878804	NES10703048	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:109479014 () rs orientation: forward

Symbol	Name	Function Class
Rr583431	regulatory region 583431	870 bp proximal
Rr583432	regulatory region 583432	1946 bp proximal
Vav3	vav 3 oncogene	Intron