rs29753043 SNP Detail

Summary

• ID
  rs29753043
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:109479159 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGGTCTTC TCTTCCTGAT
  ATGGGAAGAG GTGTGGTTTT CTAAAGAGTG AAGTATAAAC CACAATGCCA CTGCTTCCTT
  TTACCAAGCA CTACCCAGAG AGCCCTCAGG AAGCTGAGTG TCAGGAACAC TGGCACATGA
  GGCGATTTTT CACTTTTGTG GAACAAATAA TACATTTAAA AAATGTTGTA AAAGACCTGC
  S
  TCACAAGGGT ATCAAAACAT TCCCATGCAA AGAATCATAA AAAAGGATAT TTAAAATTTC
  AAAAGTACAT GTTCAGTAAT AAACTCCAAA TCTGAAAGAT ATGAGAACTC TCTTGGCAGC
  AGCTTAGCTT TCCTTAGTGT TCTTCCATAG AAAACGTAAA CTCTATTCCT GCTTTGTGGC
  CTGTAGTTTA CAATTGGTAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46878813	NES10703055	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	G	C	C	C	C	C	C		C	C	C	C		C
ss320869952	CHEV_3_109374761	CHEVERUD	SCREENING_POP	f	SNP											G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29753043					SNP	C	C	C	G	C	C	C	C	C	C	G	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46878813	NES10703055	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:109479159 () rs orientation: forward

Symbol	Name	Function Class
Rr583431	regulatory region 583431	725 bp proximal
Rr583432	regulatory region 583432	1801 bp proximal
Vav3	vav 3 oncogene	Intron