rs29753896 SNP Detail

Summary

• ID
  rs29753896
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:109479378 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCCCATGC AAAGAATCAT
  AAAAAAGGAT ATTTAAAATT TCAAAAGTAC ATGTTCAGTA ATAAACTCCA AATCTGAAAG
  ATATGAGAAC TCTCTTGGCA GCAGCTTAGC TTTCCTTAGT GTTCTTCCAT AGAAAACGTA
  AACTCTATTC CTGCTTTGTG GCCTGTAGTT TACAATTGGT ACTTTTGGCT ATTCATCTGA
  M
  TTACCAGCAG AAGAAGATGG TAGTTTGGGA CATCCCAGAA TACATAAGTT TTTCAGGGCA
  CCAGTGAAAT GGGGACTCCA GGTATGCTTC TAAGGCCAGG CTCAGGGGCT AGGGAGATGC
  CTCTGAGGGG AAAAAGGCTT GCTGGGCAAG AACGAGTTCC TGAGTTTAGA ACAGCTCTGA
  ACCCACATAA AAGCCAAGTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46878816	NES10703056	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	A	C	C	C	C	C	C		C	C	C	C		C
ss320869953	CHEV_3_109374980	CHEVERUD	SCREENING_POP	f	SNP											A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29753896					SNP	C	C	C	A	C	C	C	C	C	C	A	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46878816	NES10703056	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:109479378 () rs orientation: forward

Symbol	Name	Function Class
Rr583431	regulatory region 583431	506 bp proximal
Rr583432	regulatory region 583432	1582 bp proximal
Rr583433	regulatory region 583433	1856 bp proximal
Tssr31300	transcription start site region 31300	1907 bp upstream
Tssr31301	transcription start site region 31301	1939 bp upstream
Tssr31302	transcription start site region 31302	1957 bp upstream
Vav3	vav 3 oncogene	Intron