rs29753899 SNP Detail

Summary

• ID
  rs29753899
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:109479409 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCAG AAGAAGATGG TAGTTTGGGA
  Y
  ATCCCAGAAT ACATAAGTTT TTCAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss46878819	NES10703057	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C	T	C	C	C		C	C		T
ss320869954	CHEV_3_109375011	CHEVERUD	SCREENING_POP	f	SNP											T			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs29753899					SNP	C	C	C	T	C	C	T	C	C	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46878819	NES10703057	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:109479409 () rs orientation: forward

Symbol	Name	Function Class
Rr583431	regulatory region 583431	475 bp proximal
Rr583432	regulatory region 583432	1551 bp proximal
Rr583433	regulatory region 583433	1825 bp proximal
Tssr31300	transcription start site region 31300	1876 bp upstream
Tssr31301	transcription start site region 31301	1908 bp upstream
Tssr31302	transcription start site region 31302	1926 bp upstream
Vav3	vav 3 oncogene	Intron