CAATTCATTT GGAAACGGCT TCGTGTTAGG AAAAAAGTAT AGCAAAGACG ATCAAGAATG TGGTTTTTAT TTTGTTTTCT TTCTTTTTTT TTTTTTTGAA AAACTTTCTG CCTCTCCTAC ACTGCCATTG ATTTCGCCTC TGTTGCTATG ATTGTATGAT TAGGAATTTT TCTTTTAAAA ATTTGGCTTC ATTCTCAAGG M AGGTCCCATA ACCATAGGAC ACACAGGCCT AAATAGCTGC ACCTGGGCTG TCACCTCCCA AGCAGTCTGG GCTTTCAAGT ATCCTTGAAA CTACCCAAAG CAAGTTTATT GCTGCTTGTC TGTCTACCTA GCCTCTTTCC ATCTAGGCCT AGCTAGGGAG GAGCCAAAGC TAACTTCCAA AAAACAAAAG GAAGCTTTTC M = A/C Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss46878918 | NES10702956 | PERLEGEN | MM_PANEL2 | f | SNP | C | C | C | A | C | C | C | C | C | C | C | C | C | C | C | ||
ss320869993 | CHEV_3_109378779 | CHEVERUD | SCREENING_POP | f | SNP | A | A | |||||||||||||||
SNP Consensus Information | ||||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
||||
rs29753925 | SNP | C | C | C | A | C | C | C | C | C | C | A | C | C | C | C | A | C |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss46878918 | NES10702956 | PERLEGEN | MM_PANEL | f | SNP | A/C |
Location: Chr3:109483177 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Rr583432 | regulatory region 583432 | 1944 bp distal | ||||||
Rr583433 | regulatory region 583433 | 1402 bp distal | ||||||
Tssr31300 | transcription start site region 31300 | 1871 bp downstream | ||||||
Tssr31301 | transcription start site region 31301 | 1844 bp downstream | ||||||
Tssr31302 | transcription start site region 31302 | 1835 bp downstream | ||||||
Vav3 | vav 3 oncogene | Intron |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/25/2025 MGI 6.24 |
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