rs29754166 SNP Detail

Summary

• ID
  rs29754166
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:50911746 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGCTGTTG AGGAAGCCAG
  AGATATAATT TTACCTTCAT TATGCCTTAT TGCAGATGTT ATTGATTTAA TCTCGTTGCA
  TTTTACTGTG TAATATCAAT TGGCACTGTC TTTGCTGTAG AAACTGGGAA CTGTGTTTGT
  TCTTCTTGTC TTCGCAGCAG AAGGTATAGT TAGTCGGACA GTCCAAGTAG GTCCAAGTCG
  Y
  CATCCCGAAC TCCGACCCAC TCACCACCTC TGATGGCCAC CGTAGCTGAG ACCCATGTGC
  CGCCTTCAGA GACTCAGCAT AGACCCATGA CAGAACAAGA ATCTGAAAAT GGGGCATCTA
  CATTCTACAT CCTTTAAGAT AATGTTCAAG CGTGTGAACC ATCAGCATCA AACAAATGAG
  GAGAAAGGGT GGGGGGCATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47876620	NES11680075	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29754166					SNP	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47876620	NES11680075	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50911746 () rs orientation: forward

Symbol	Name	Function Class
Gm31686	predicted gene, 31686	119 bp downstream
Gm67430	predicted gene, 67430	within coordinates
Rr543	regulatory region 543	within coordinates