rs29754770 SNP Detail

Summary

• ID
  rs29754770
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:16060774 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCCTATTTT AATTTTTTTT TTTAGAGGGA CTCAAATGTG
  CGTAACATTA TCTTTTCTCT TTCTTTTGAC CCTGAGCTGG TGCCATGTTG TCTCAAGTAT
  Y
  TTGTCTTGGT AACACACCAG TTAGAATTCA GTACAAAAGA ATGTTTCCCA AACACCTAAG
  ATCCTAGATG TTGTTGATTT GTGCCATGTT TTTTCCCAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49564116	NES12895838	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	C	T	T	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29754770					SNP	T	T	T	T	T	T	C	C	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49564116	NES12895838	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:16060774 () rs orientation: forward

Symbol	Name	Function Class
Gm5150	predicted gene 5150	239 bp upstream
Rr374567	regulatory region 374567	1508 bp downstream
Tssr32658	transcription start site region 32658	275 bp upstream
Tssr32659	transcription start site region 32659	249 bp upstream
Tssr32660	transcription start site region 32660	210 bp upstream