rs29754771 SNP Detail

Summary

• ID
  rs29754771
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:16060684 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAGATCACT TCAATATTAT GTGAAAACAG GAACCATACT
  GCTTATTTTG AAATAGATAA ACAGTTTTGC ATGTAGCTGC TGGGAAGGAG TTCCTATTTT
  M
  ATTTTTTTTT TTAGAGGGAC TCAAATGTGC GTAACATTAT CTTTTCTCTT TCTTTTGACC
  CTGAGCTGGT GCCATGTTGT CTCAAGTATT TTGTCTTGGT                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss49564117	NES12895836	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs29754771					SNP	A	A	A	A	A	A	A	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49564117	NES12895836	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:16060684 () rs orientation: forward

Symbol	Name	Function Class
Gm5150	predicted gene 5150	149 bp upstream
Rr374567	regulatory region 374567	1418 bp downstream
Tssr32658	transcription start site region 32658	185 bp upstream
Tssr32659	transcription start site region 32659	159 bp upstream
Tssr32660	transcription start site region 32660	120 bp upstream