rs29754772 SNP Detail

Summary

• ID
  rs29754772
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:16060645 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TATATGTACA AAAAGGAAGT GCTTTAACTT ACTCTGCATA
  AAGATCACTT CAATATTATG TGAAAACAGG AACCATACTG CTTATTTTGA AATAGATAAA
  Y
  AGTTTTGCAT GTAGCTGCTG GGAAGGAGTT CCTATTTTAA TTTTTTTTTT TAGAGGGACT
  CAAATGTGCG TAACATTATC TTTTCTCTTT CTTTTGACCC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49564118	NES12895835	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29754772					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49564118	NES12895835	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:16060645 () rs orientation: forward

Symbol	Name	Function Class
Gm5150	predicted gene 5150	110 bp upstream
Rr374567	regulatory region 374567	1379 bp downstream
Tssr32658	transcription start site region 32658	146 bp upstream
Tssr32659	transcription start site region 32659	120 bp upstream
Tssr32660	transcription start site region 32660	81 bp upstream