rs29754773 SNP Detail

Summary

• ID
  rs29754773
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:16060509 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACCTCTGC TGTGACAGTT
  CAGGTAATTA ACTGGAATCC TTTGCTTTCA ATAGTAAGAG TAGCTCAGTG TCAGGGAGAT
  GATTCTGTTG TTGGGGCATG CTCACCTTTA AGTCCCAGCA GCAGGATCAA CAGCAGGACA
  CTGTGATGAA TCTGGGTCTG GGCATCTAGG AGAAGCATGG TTGGGGTTAA GAACCCTGTC
  R
  GGACCAGAAT CAGTTCTCAT GAGATCCCAG GTTCTTATAT GTACAAAAAG GAAGTGCTTT
  AACTTACTCT GCATAAAGAT CACTTCAATA TTATGTGAAA ACAGGAACCA TACTGCTTAT
  TTTGAAATAG ATAAACAGTT TTGCATGTAG CTGCTGGGAA GGAGTTCCTA TTTTAATTTT
  TTTTTTTAGA GGGACTCAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49564119	NES12895834	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29754773					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49564119	NES12895834	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:16060509 () rs orientation: forward

Symbol	Name	Function Class
Gm5150	predicted gene 5150	within coordinates
Rr374567	regulatory region 374567	1243 bp downstream
Tssr32658	transcription start site region 32658	10 bp upstream
Tssr32659	transcription start site region 32659	within coordinates
Tssr32660	transcription start site region 32660	36 bp downstream