rs29755468 SNP Detail

Summary

• ID
  rs29755468
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:16060317 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTAGAGTAT CGGTAATCCC
  TTTGGCACGT ATAGAAGGAA CTAAAGCTCA CTGAAAAAGG TCAAGAAGAG CAGGCTTTGT
  GTGGAAAACT GTTATAGATG AATCATTTCT ACTCTATGTA TCAAAACTAT AAGCTCAAAT
  TCCATTACAG GCAGTGTTCA GAATTCTGGC TCTATTATGT GAGACAATGT TCTTACCTCT
  S
  CTGTGACAGT TCAGGTAATT AACTGGAATC CTTTGCTTTC AATAGTAAGA GTAGCTCAGT
  GTCAGGGAGA TGATTCTGTT GTTGGGGCAT GCTCACCTTT AAGTCCCAGC AGCAGGATCA
  ACAGCAGGAC ACTGTGATGA ATCTGGGTCT GGGCATCTAG GAGAAGCATG GTTGGGGTTA
  AGAACCCTGT CGGGACCAGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49564124	NES12895823	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29755468					SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49564124	NES12895823	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:16060317 () rs orientation: forward

Symbol	Name	Function Class
Gm5150	predicted gene 5150	within coordinates
Rr374567	regulatory region 374567	1051 bp downstream
Tssr32658	transcription start site region 32658	175 bp downstream
Tssr32659	transcription start site region 32659	191 bp downstream
Tssr32660	transcription start site region 32660	228 bp downstream