rs29755887 SNP Detail

Summary

• ID
  rs29755887
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:84412560 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGGGGACAAC ACAAAAGTGC CTCTTCCACT TGTCCTTTCT
  GGTTCCAGGA CTCAGAGATC CAGTGAGAAT AGAGCCACAG AGTGGGAACC GGAAATGCCC
  R
  GAGGAAGGCC GCCTGCCCAG CCACAGCATC CAAACCTTAA TGAGGAGCAG CAAATGCACT
  ATGAGCACCC TAGGTTTTGA AGAAATTATG CTATTAATA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss48383783	NES12277780	PERLEGEN	MM_PANEL2	f	SNP	G			G		G	A	G	G
ss146130427	ENSMUSSNP7087257	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs29755887					SNP	G	G	G	G	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48383783	NES12277780	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:84412560 () rs orientation: forward

Symbol	Name	Function Class
Gm65799	predicted gene, 65799	1640 bp upstream
Rr531984	regulatory region 531984	1651 bp distal
Rr531985	regulatory region 531985	1341 bp distal
Rr531986	regulatory region 531986	475 bp distal
Tssr146027	transcription start site region 146027	1484 bp downstream
Tssr149628	transcription start site region 149628	1606 bp upstream
Tssr149629	transcription start site region 149629	1271 bp downstream