rs29755888 SNP Detail

Summary

• ID
  rs29755888
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:84412339 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAAGCAGTCT GGCCAGGTGC AACCCAACTG AGAAGGGTAA
  AAACTATGTT GCAAAGACTA TGTTGCCCAC TCAAATCTGT TTGGTTTCAA AGATCACATC
  M
  TTTTAAGGGC TACCTGAGAG ACCCTGGGGC AAGAAGAGAT GAAGCTGTCA AGAAAGTGAC
  AAGGTAGTTA ATTGCCAGCA TGAGACAGAA CTCAGAACT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss48383784	NES12277779	PERLEGEN	MM_PANEL2	f	SNP			A		A	C	A	C
ss146130405	ENSMUSSNP6350625	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs29755888					SNP	A	A	A	C	A	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48383784	NES12277779	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:84412339 () rs orientation: forward

Symbol	Name	Function Class
Gm65799	predicted gene, 65799	1419 bp upstream
Rr531984	regulatory region 531984	1430 bp distal
Rr531985	regulatory region 531985	1120 bp distal
Rr531986	regulatory region 531986	254 bp distal
Tssr146027	transcription start site region 146027	1263 bp downstream
Tssr149628	transcription start site region 149628	1385 bp upstream
Tssr149629	transcription start site region 149629	1492 bp downstream