rs29758646 SNP Detail

Summary

• ID
  rs29758646
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:84373359 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTAGCAGTG GAATGTGGTA GAATTACAAA CACAGACAGT
  GGGAGTGCGT CAAGGAACAA GGGAGTCACA TGGAAACTTC TCTGGCTGGT GGGAACCTGC
  Y
  TGTAAGCCCG TTGGGTTCAT TGCCCTGGAA ATAACACTAG ACCTCACTTC AGGATTTCAC
  TGAAATGCCA CCAACCCAGA AAAGCCAACC CTGACCTGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss48383923	NES12278889	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs29758646					SNP	T	T	T	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48383923	NES12278889	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:84373359 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9563	CpG island 9563	1164 bp proximal
Gm35551	predicted gene, 35551	within coordinates
Gm65795	predicted gene, 65795	within coordinates
Rr531968	regulatory region 531968	1872 bp distal
Rr531969	regulatory region 531969	1646 bp distal
Rr531970	regulatory region 531970	1173 bp proximal