rs29759489 SNP Detail

Summary

• ID
  rs29759489
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:84212285 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTTCTCTC TCTCTCTTCT
  CCTCCATTTC TCTCCTCTCT CGTTCTGTGT TCTCTCTTTT GTTTCCAACA AGATCTTGAT
  ATGCAGCCCA GGATCGCTTG CCTCAGACTT AGACCCACTG AATTTCAGCC TCCCAGATGC
  TGGGATCACT AGAGAGAGCA CCGCATCTGC CTACAGTGGC TTTTTAAAAA CAGGGAAAAG
  S
  AAGGCAAGAA CAATAGAAAA ATCGCTTATT ATTATTGTTC GCCACCATGT CATGTAGAAA
  CCGTATCTTG AGTTAAGGAA ACTTGTTGTT TGAATGATTT TTATCAGTTT CTTTCTACTT
  TATAAGCTTG ACTTCTAGAA AAATTTGAAT TATAGGATAT GTTGCATTCT ATCCTATAGG
  CTGCACTGTG TTGGAAATTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39548742	mCV23105669	ABI	CRAMUS_MOUSE	f	SNP		G						C
ss48384685	NES12283177	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C		G	G	C	G	G	G	G
ss146124417	ENSMUSSNP1620936	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29759489					SNP	G	G	G	G	G	G	C	C	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48384685	NES12283177	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:84212285 () rs orientation: forward

Symbol	Name	Function Class
Rr405491	regulatory region 405491	1063 bp downstream
Rr531899	regulatory region 531899	1882 bp distal
Rr531900	regulatory region 531900	953 bp distal
Rr531901	regulatory region 531901	1291 bp distal
Rr531902	regulatory region 531902	1913 bp proximal
Tssr146015	transcription start site region 146015	792 bp upstream