rs29759492 SNP Detail

Summary

• ID
  rs29759492
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:84211200 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTGTAGAAA TGAAACTGGG TTGGTGAGGA ATGCTCGGCT
  ACTTGTGGGG TGGGGTGAGG TGAGGTGAGG TGCTGAGGCG GGAAGATCCC AAGTTCAAGA
  S
  CTGCTTGGGC TACACAGTGA GTTCAAGGCC ACCCTGAGCA GCTTTGGTGA GCTCCAAGGT
  GAAGTGGGCT TAGGAATGCA GCTCTCACTT AGCACCTAC                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39570639	mCV23105646	ABI	CRAMUS_MOUSE	f	SNP	G	G						C
ss48384689	NES12283173	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	C	G	G	C	C	G	G	C	G	G	G	G
ss146124400	ENSMUSSNP2287830	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29759492					SNP	G	G	G	C	G	G	C	C	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48384689	NES12283173	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:84211200 () rs orientation: forward

Symbol	Name	Function Class
Rr405491	regulatory region 405491	within coordinates
Rr531899	regulatory region 531899	797 bp distal
Rr531900	regulatory region 531900	within coordinates
Rr531901	regulatory region 531901	206 bp distal
Tssr146015	transcription start site region 146015	1877 bp upstream