rs29760597 SNP Detail

Summary

• ID
  rs29760597
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:84210915 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGCTGCCTC TGAGTTTTCT
  CAGCTTGCAT CGATTAGACA AGTCCTTTAG ATTGATCATT TTCTCGAGTT TACTGTGCAT
  AAAGATCACT TGGGACATTC AGTTAAGTGT GGCTGTTTGG TGTCTGTCAT GTGGACTCGG
  GTCCTACATG GCTCAGCAAT GTGCATTTTT AACAAGCTAC GTGGATCAGA GAGCACATTT
  Y
  GAAAGAAACA GTCCTAGAAG CTGATTGTAT CCTCCTGGGG AACGTGCTGG GATTGAGGCT
  GCCGACAGGT GGCAGTACTG CATCGTGATG CTCTAATTAC ACCTCGGGCT TTCTTCCTTA
  AACTGGGATT GTTGACTGTA ACTGGCCGAG ACAGACAGTT CTGGGGCTTG CTGTTTTGCA
  AGAATGTGTA GAAATGAAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48384694	NES12283166	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C		T	T	C	T	T	T	T
ss146124384	ENSMUSSNP1452908	ENSEMBL	ENSEMBL_Sanger	f	SNP								C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29760597					SNP	T	T	T	T	T	T	C	C	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48384694	NES12283166	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:84210915 () rs orientation: forward

Symbol	Name	Function Class
Rr405491	regulatory region 405491	6 bp upstream
Rr531899	regulatory region 531899	512 bp distal
Rr531900	regulatory region 531900	within coordinates
Rr531901	regulatory region 531901	58 bp proximal