rs29761476 SNP Detail

Summary

• ID
  rs29761476
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:84209246 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGGCAGGG CCTGATTCTA
  TCAGCTGAGA GATAGTTTAA GTTTGGAATT CTGGAGACTC TTGAGCGGTT ATAAAAGGGC
  CAGAGCCTGC AGCGGTGGCT GCTGCTGTTC CCTGCTATTG CTGGTTCCTG AAGCTGCTTT
  TGCTGTTCCT CTGAATTGCT GGTTGCACAT ATCCTGATTA TAAAGACTGG ACTTGCCCCT
  R
  AGAACTCAAT GCCCCTAACC ATCAGGAAGT AGTCTAAAGA AATCTATGCC CCCTTTCCTT
  CTAGGCTTCT TTCTTCTACC AGGGCTGGGG GTGGGGGGCA TTGGGGGAGG AGAAGGATGG
  CAGAGAGAAG AACCCAATAA AGTAGCCCAA AAGCACGGTT ACACATCCCA CGGAGATCCA
  GGCCTCCTAA GCATCCTCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss48384703	NES12283156	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs29761476					SNP	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48384703	NES12283156	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:84209246 () rs orientation: forward

Symbol	Name	Function Class
Rr405491	regulatory region 405491	1675 bp upstream
Rr531899	regulatory region 531899	268 bp proximal
Rr531900	regulatory region 531900	1375 bp proximal
Rr531901	regulatory region 531901	1727 bp proximal