rs29761477 SNP Detail

Summary

• ID
  rs29761477
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:84209066 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGAAAACCCA GTTATGTGAC TATGTTTTTG TTTCAATCCC
  AGGCGTGGGA TATGGGGGCT GACTAGGCTT TGTCTCATGC TCTGGCAGGG CCTGATTCTA
  Y
  CAGCTGAGAG ATAGTTTAAG TTTGGAATTC TGGAGACTCT TGAGCGGTTA TAAAAGGGCC
  AGAGCCTGCA GCGGTGGCTG CTGCTGTTCC CTGCTATTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss48384705	NES12283154	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	C	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs29761477					SNP	T	T	T	T	C	C	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48384705	NES12283154	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:84209066 () rs orientation: forward

Symbol	Name	Function Class
Rr405491	regulatory region 405491	1855 bp upstream
Rr531899	regulatory region 531899	448 bp proximal
Rr531900	regulatory region 531900	1555 bp proximal
Rr531901	regulatory region 531901	1907 bp proximal