rs29764405 SNP Detail

Summary

• ID
  rs29764405
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:126774338 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATTTTTTT CTCAACCAGA
  CTTTGACCCT TTTAGACGTC AAACTATTCA AACCTCTCAT TTCCCCTTTA AAGGTATTTT
  AAAGTATACC TATATGAAAA CAAAAGCATA ATACAAATCC CATAGTATAA TCACATGTAC
  CTTACATAGA AGGCACTATC TGGGAGTGAA AGGAAAGTAT ATAGATATTC ATATGGCTAT
  W
  GAGAGAAATG TATGTGAGCG CAGTCAACAA AAGAGCAGGC CAGAACGCTA ACACCTGGAA
  CCCTGTTCAC ACCGGCCCCT CCATCCGCCT TTTTCTAGGC AAAAGGCAGC AGTAAGATTG
  GGCTACACAG AGAAGCACAG AAGTGAATTC TTTGAATTAA GAAGAAAAGA TGCCAGCACA
  GTGAAAAATT ATAGAGAGGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss45360686	mCV22628447	ABI	CRAMUS_MOUSE	f	SNP	A	T	A
ss147514350	ENSMUSSNP3713694	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	A		A
ss320498569	CHEV_2_126758154	CHEVERUD	SCREENING_POP	f	SNP				A		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs29764405					SNP	A	T	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:126774338 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12210	CpG island 12210			349 bp proximal
Gm75308	predicted gene, 75308			275 bp upstream
Rr564422	regulatory region 564422			within coordinates
Rr564423	regulatory region 564423			637 bp proximal
Rr564424	regulatory region 564424			670 bp proximal
Rr564425	regulatory region 564425			807 bp proximal
Sppl2a	signal peptide peptidase like 2A			Intron
				Noncoding-Transcript-Variant
Tssr26084	transcription start site region 26084			512 bp upstream
Tssr26085	transcription start site region 26085			575 bp downstream
Tssr26086	transcription start site region 26086			704 bp downstream
Tssr26087	transcription start site region 26087			735 bp downstream
Tssr26088	transcription start site region 26088			797 bp downstream
Tssr26089	transcription start site region 26089			811 bp downstream
Tssr26090	transcription start site region 26090			1449 bp downstream