rs29764584 SNP Detail

Summary

• ID
  rs29764584
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:108779823 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTTGAGAT AGTTGGAGAT
  TGTTTTCTCA ATGAGTGATA AGTATCCAGA AAATCACAGA GTATATAGAG GACTTAAATA
  GCCCTGTCAG TCATCTTGAA TTAATGAACA TTTATAGAGC AATTCCTATT AATGCACAGA
  ATTAGTATTA ATTAGCAGAT ACACATATTT TCCAAGTGTG TAAAGAATTA CTAACCTAGA
  W
  CATCTGGGCA ATGAAACAAG CATGTTATCT GATCACAATG AATTTAACTA GAAATTAGCA
  GTGTGAAAAA TGTTTCTGAA TGGAAAAGGA TAGTATCCTT TTATGTGTCA AAGAAGAAAT
  CAAAGGTAGT AGTTTTGTAC GAGCTGAAAA TAAAAATATA GAATTTCAAA ATAATGGGGT
  AGTATTAAGT CATTAGTAGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45859005	mCV23825981	ABI	CRAMUS_MOUSE	f	SNP	T	T	A	A
ss149026509	ENSMUSSNP3951476	ENSEMBL	ENSEMBL_Sanger	f	SNP	T			A
ss321637452	CHEV_5_109060976	CHEVERUD	SCREENING_POP	f	SNP					T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29764584					SNP	T	T	A	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:108779823 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16204	CpG island 16204	1648 bp distal
Rr616724	regulatory region 616724	1938 bp distal
Rr616725	regulatory region 616725	1345 bp distal
Tmem175	transmembrane protein 175	within coordinates
Tssr47845	transcription start site region 47845	1939 bp downstream
Tssr47846	transcription start site region 47846	1907 bp downstream