rs29765528 SNP Detail

Summary

• ID
  rs29765528
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:87703701 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGACTGAGC TCAGGGCAGC TCACCCGTGG GGGAGGACGT
  GGCAGAGCCC AGCCTGCGTA GGAAACCATG CTGCTGAAAA GACTCAGCGT GCAGGGGCTC
  Y
  GTGCATTTTC CTGGGTTGCT GACCTTGAAG TTTGACTTAT TTGGTTCTGA CTTGGAATGG
  CCAATGAGAG GATAGAAACG GCAGGCCTTT AGTGACCCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss48385255	NES12276820	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	T	T	C	C	C		T	C	C	T		C
ss146179462	ENSMUSSNP6548354	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T					C
ss325499253	CHEV_17_87795613	CHEVERUD	SCREENING_POP	f	SNP										C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29765528					SNP	C	T	T	C	T	T	C	C	C	C	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48385255	NES12276820	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:87703701 () rs orientation: forward

Symbol	Name	Function Class
Rr333853	regulatory region 333853	101 bp distal
Rr343633	regulatory region 343633	within coordinates
Stpg4	sperm tail PG rich repeat containing 4	within coordinates