rs29766265 SNP Detail

Summary

• ID
  rs29766265
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:87702556 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCCTTCTCC ACCTGCCCTG CACACACACA CACACACACA
  CACACACACA CACACGCACA CACACACACA CACACACACA AGTGGAATCC TAATACCGAT
  Y
  GCCCTTCACA GTGTGTCTCT TAAAATACTT ACTGAACTGA CAGGTAAGAA TCGGGGAACC
  TTAGATCGAA AACAAGAAGT AATAGAGCCT TTTGGGGATG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48385262	NES12276857	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29766265					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48385262	NES12276857	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:87702556 () rs orientation: forward

Symbol	Name	Function Class
D17Mit130	DNA segment, Chr 17, Massachusetts Institute of Technology 130	1129 bp distal
Rr333853	regulatory region 333853	845 bp proximal
Rr343633	regulatory region 343633	758 bp proximal
Stpg4	sperm tail PG rich repeat containing 4	within coordinates