rs29767319 SNP Detail

Summary

• ID
  rs29767319
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:67622650 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATTC TCATAGCCGT TTGATGTGTC
  Y
  TTTTCGAGCA TCTTCTCTTT GCAAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45859411	mCV25116683	ABI	CRAMUS_MOUSE	f	SNP		T					C		T
ss46572965	NES10442600	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	T		C	T	T	T		T	T	T	C		T
ss148602247	ENSMUSSNP7089272	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							T
ss321565303	CHEV_5_67856546	CHEVERUD	SCREENING_POP	f	SNP												T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29767319					SNP	T	T	T	C	T	T	C	C	T	T	T	T	T	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46572965	NES10442600	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:67622650 () rs orientation: forward

Symbol	Name	Function Class
C330024D21Rik	RIKEN cDNA C330024D21 gene	within coordinates
Rr366834	regulatory region 366834	772 bp downstream
Rr612680	regulatory region 612680	1389 bp distal
Rr612681	regulatory region 612681	1437 bp proximal
Rr612682	regulatory region 612682	1561 bp proximal
Tssr46586	transcription start site region 46586	1370 bp downstream