rs29767501 SNP Detail

Summary

• ID
  rs29767501
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:45044171 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGGA ACTTTCTGAC TGCTTTTTAG
  S
  CTGGATGCTC AATTGAGTAA CTGTT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39115557	mCV22692416	ABI	CRAMUS_MOUSE	f	SNP		C	C					G		G
ss52631926	NES15456249	PERLEGEN	MM_PANEL2	f	SNP	C		C	G	C	C	C		C	G	C	G		C	G	G	C		C
ss148954913	ENSMUSSNP4129686	ENSEMBL	ENSEMBL_Sanger	f	SNP			C							G
ss324330786	CHEV_13_44986064	CHEVERUD	SCREENING_POP	f	SNP													C					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29767501					SNP	C	C	C	G	C	C	C	G	C	G	C	G	C	C	G	G	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52631926	NES15456249	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:45044171 () rs orientation: forward

Symbol	Name	Function Class
Jarid2	jumonji and AT-rich interaction domain containing 2	within coordinates
Rr276124	regulatory region 276124	30 bp proximal