rs29767977 SNP Detail

Summary

• ID
  rs29767977
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:165586227 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ACGCGTCACA GGTATTTAGA AGGGGTCAGC TCTGTGGTAG GCAGATCTTA TAAAGGAAGT
  GAATGGCAGT GTGTCTTACA GAACTGAGTC TTAAACCACA TGTGGTAATG ACCATATGTC
  ACATATCTAT GACCCCAGCA CTCGGAGGCC TGGAGCTAGG AAGATTAGGG TTCAAGGCCA
  ACCAGACCTT CTATCAAAAA AGGAAGAAAG AAAGAAAGAA AGAAAAAAGA AAGAGAGAGA
  GAGAAAGAAA GAGAAAAAAG AAAAGAAAAG AAAAATAAAG AAAAGAAGAG AAAAGAAAAG
  R
  AATTTAATTT CAAGGACCAA ATAGGCTCTG TCGCAAGTGC TGAACATGGT GGTTGTAATG
  GGACCAAAGG CAATACACAA ATTGTCCATG TGGTTGTGTT TCAACAAAAC CTTATTTGTG
  GACAGAAAAA GAAGTAAATC TTTAGAAGCA GGCCCCTGGA ACCAGTAGTG GGGCCTGATG
  CCTATAGTCT AACACTAGGG AGACTGGGGC AGGAGATTCC CTTCCAGTTT GAAAGTCAGT
  TTGGGACACA GAGCAAAATC TTGTCTCAAA GAAATAAAAA GCATGCTATT GGCTGTGTCC
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J
ss45362490	mCV22645804	ABI	CRAMUS_MOUSE	f	SNP	G	A	A
ss148243785	ENSMUSSNP3922574	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J
rs29767977					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165586227 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12714	CpG island 12714			1741 bp distal
Eya2	EYA transcriptional coactivator and phosphatase 2			Intron
				Noncoding-Transcript-Variant
Rr569992	regulatory region 569992			1612 bp distal
Rr569993	regulatory region 569993			540 bp proximal