rs29769080 SNP Detail

Summary

• ID
  rs29769080
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152950585 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCATCACCC AGGGTGCGGC
  TAAGGCGCCC AGATGGCCAG TGAGCGCCAC TGGGTTGCGG CTCCCAGCTT GCACTCCCCG
  CGGCGGCTCT CAGACGGGTG GGAGGGGACC AAAGTCGCCC GTGAAGGGGG CTCTGACCCG
  TTCCGAGCGC CAACGCAGCC TCTGTAGCCC GCAAGTCTTC GTCGCTTGCT CCGGGCTCTG
  R
  AGTCCGGGGC CACCAGGGGC CGCAGCGCTG GGGGGTCGGT CTAGCTGCGA GGATCCGGGC
  TGCCCACGAA GCGAAGGGCG GGCGCCCAGG TGAGTGCGGG GTGAGAGGGC GGGAATGGGA
  CACACCCCCG TCCCCGAGAA CGTGCAGACC TCGGGCTCCA GGGATCTGAG ATCCTGGGCG
  AGCTGTGGGG GTGCCGAGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45362608	mCV22910307	ABI	CRAMUS_MOUSE	f	SNP	A	G	A	A
ss147984300	ENSMUSSNP5243852	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29769080					SNP	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152950585 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12479	CpG island 12479	within coordinates
Hck	hemopoietic cell kinase	within coordinates
Rr567550	regulatory region 567550	627 bp distal
Rr567551	regulatory region 567551	187 bp distal
Rr567552	regulatory region 567552	137 bp distal
Rr567553	regulatory region 567553	6 bp proximal
Tssr20863	transcription start site region 20863	992 bp downstream
Tssr20864	transcription start site region 20864	956 bp downstream
Tssr20865	transcription start site region 20865	181 bp downstream
Tssr20866	transcription start site region 20866	123 bp downstream
Tssr26882	transcription start site region 26882	353 bp downstream