rs29769798 SNP Detail

Summary

• ID
  rs29769798
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:144367732 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAGATTAAAA ATTTCCATCA TGAACCTATG CCTAAACACG
  AAAACAACAG AGTGCTACTT ATTTTAAATG CATTGAAGCC AGAAGAGCAT TAAATTAATA
  Y
  GCCACCTACA GATAACGCCC AGTTTAATTA ATGAAATTAT TACACGTTGG CTGTATGCTT
  GCTCTTGACG TCTGCTGTTG GATATTCACC TAAACACTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45362416	mCV22517465	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	C
ss147798038	ENSMUSSNP5226523	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29769798					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:144367732 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12356	CpG island 12356	1290 bp proximal
Dzank1	double zinc ribbon and ankyrin repeat domains 1	within coordinates
Polr3f	polymerase (RNA) III (DNA directed) polypeptide F	1933 bp upstream
Rr566471	regulatory region 566471	220 bp proximal
Rr566472	regulatory region 566472	1047 bp proximal
Rr566473	regulatory region 566473	1576 bp proximal
Rr566474	regulatory region 566474	1947 bp proximal
Tssr20540	transcription start site region 20540	1703 bp upstream
Tssr20541	transcription start site region 20541	1926 bp upstream
Tssr20542	transcription start site region 20542	1979 bp upstream
Tssr26607	transcription start site region 26607	1529 bp downstream
Tssr26608	transcription start site region 26608	1613 bp downstream
Tssr26609	transcription start site region 26609	1627 bp downstream
Tssr26610	transcription start site region 26610	1689 bp downstream
Tssr26611	transcription start site region 26611	1714 bp downstream