rs29769889 SNP Detail

Summary

• ID
  rs29769889
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:127903381 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGAGGGAGAG GGAGAGGGAG AGGGAGAGGG AGAGAGACTC
  ACACACAGAC ACACACACAC TAGTTTGGAA GTCTATTGTA ATGTTAAATG TACACTTATT
  Y
  TATGATCCAG AAATTCTGTC CCTAGAGATA TGGCCAAGAA ATGATGCTAC ATGGTTCATA
  AATAGCCTTA TACAGGAGTG TTCCTAACAG CTCTATTAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J
ss45361934	mCV23907253	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss147550430	ENSMUSSNP3389452	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J
rs29769889					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127903381 () rs orientation: forward

Symbol	Name	Function Class
Acoxl	acyl-Coenzyme A oxidase-like	within coordinates
Rr397293	regulatory region 397293	170 bp downstream
Rr397294	regulatory region 397294	40 bp upstream
Rr564634	regulatory region 564634	within coordinates
Tssr20040	transcription start site region 20040	1639 bp upstream
Tssr20041	transcription start site region 20041	1660 bp upstream