rs29770600 SNP Detail

Summary

• ID
  rs29770600
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:76374234 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAGC TGCCCAGCCC TAATACCAAC
  Y
  GCACGGACAA GAACAGCTCG GCGGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39611898	mCV25200596	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	C
ss325699773	CHEV_18_76400817	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29770600					SNP	C	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:76374234 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10251	CpG island 10251	within coordinates
Rr540992	regulatory region 540992	within coordinates
Rr540993	regulatory region 540993	549 bp proximal
Smad2	SMAD family member 2	417 bp upstream
Tssr151989	transcription start site region 151989	140 bp upstream
Tssr151990	transcription start site region 151990	169 bp upstream
Tssr151991	transcription start site region 151991	257 bp upstream
Tssr151992	transcription start site region 151992	497 bp upstream
Tssr151993	transcription start site region 151993	729 bp upstream
Tssr151994	transcription start site region 151994	972 bp upstream