rs29771410 SNP Detail

Summary

• ID
  rs29771410
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:150882278 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAAGGTTT GCCTTCTGTT
  GGTTGAAATC AACCTCTAAT CCTTTTTTAT TGATGAAATT TGGAGTCACT TTCACTAACC
  TGGAACTTAT TGGGTCAGCC AATGCCACAG ACCTGGTTCT GAGCTTTCGA ATTAGGATTG
  GTTCTTACAT TGTAAGTTAT TCAGAGAAAA TGAGAAAGTA TTTCATAACA TGTGAGAATT
  K
  ATTAAATTTA ATTGTCTATA GTTTCAGTTT TTGTTGTTTG TTTGTTTGTT TTGAGACAGT
  GTCACATTGA GTAACTGATT GGCCTGGAGC TAGCTGTGTA GACCATGCTG GCCTCAAATT
  CAGAGTGATT TGCCTCCCTC TGTCTCCCAA GTGCTAGTTC TCCCAAGTAC CACCACATCT
  GGCTTGAATT AACTTCAACT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45361367	mCV22554917	ABI	CRAMUS_MOUSE	f	SNP	T	G	G	G
ss147953198	ENSMUSSNP1510554	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29771410					SNP	T	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:150882278 () rs orientation: forward

Symbol	Name	Function Class
A130094D17Rik	RIKEN cDNA A130094D17 gene	within coordinates
Cpgi12417	CpG island 12417	482 bp distal
Nanp	N-acetylneuraminic acid phosphatase	979 bp upstream
Rr397387	regulatory region 397387	742 bp downstream
Rr567146	regulatory region 567146	971 bp distal
Rr567147	regulatory region 567147	889 bp distal
Rr567148	regulatory region 567148	212 bp distal
Tssr20713	transcription start site region 20713	841 bp downstream
Tssr26734	transcription start site region 26734	955 bp upstream