rs29771823 SNP Detail

Summary

• ID
  rs29771823
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:62748021 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCCA AGTCAAAAGT ACGAGGGAGA
  K
  CAGCATCCTC TGGTGCCAAC AGCCA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39613612	mCV24030087	ABI	CRAMUS_MOUSE	f	SNP		G	T					G	G
ss50434352	NES13454919	PERLEGEN	MM_PANEL2	f	SNP	G			T	T	G	G		G	G		G	G	G		T
ss147273273	ENSMUSSNP4075431	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T						G
ss325650764	CHEV_18_62774604	CHEVERUD	SCREENING_POP	f	SNP											G				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29771823					SNP	G	G	T	T	T	G	G	G	G	G	G	G	G	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50434352	NES13454919	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:62748021 () rs orientation: forward

Symbol	Name	Function Class
Spink10	serine peptidase inhibitor, Kazal type 10	within coordinates
Spink13	serine peptidase inhibitor, Kazal type 13	within coordinates
Tssr153633	transcription start site region 153633	726 bp downstream
Tssr153634	transcription start site region 153634	767 bp downstream
Tssr153635	transcription start site region 153635	792 bp downstream