rs29771905 SNP Detail

Summary

• ID
  rs29771905
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:59306428 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTAACTCC ACCTAGACAT
  CAGTGTCTGC ATAATAAACT CTGTGTCAGG AGGCAGCAAT TATCTAGCTG GAGTCTCCAA
  GTCCAAAGCT CTGTGCTTTG AACAGTAGGC AATACCTTAT ACATGCTTGT TAAACAGATT
  AGTAAATGGA GTTAACTTTC TTCACGATTA TTCTAAACGA GTCCTGAGTG AGTTATCTGT
  R
  CCTAATGAGA ATTAATGGCT TTGTAGACTA GCCCGTTTGA ATGAAGAGCA GCTAGGAGCT
  TGCAGGGCAG TTTGCTGATG TGTAAGCAGA TGTGGTTCTC AACCACTAAC CACACGAAAT
  TGGGAAACTC TGAAAATGTA CTACCCATTG TAGCAGTAGC TGACCATACG GGGCGATTTA
  AATCAGAACT AATTGAAATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss39615841	mCV23241569	ABI	CRAMUS_MOUSE	f	SNP	G	A	A
ss147209008	ENSMUSSNP7088174	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs29771905					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:59306428 () rs orientation: forward

Symbol	Name	Function Class
Chsy3	chondroitin sulfate synthase 3	1984 bp upstream
Cpgi10086	CpG island 10086	1308 bp proximal
Gm54033	predicted gene, 54033	within coordinates
Gm58413	predicted gene, 58413	within coordinates
Rr538516	regulatory region 538516	1804 bp proximal
Tssr151236	transcription start site region 151236	1977 bp upstream