rs29773482 SNP Detail

Summary

• ID
  rs29773482
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:74627834 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGTGAAAC CGCTTTCATG
  GCCTTTGCTG CCAACAGCCT GCAGCTTGTT CTCTTTGAGA GCAACTCACT CTGAACCATT
  AAAGCCCCGC TGTCAACAGC GTCTTATAGG AGCCAATGAA AGATGTTTAA GTAAGAGCCG
  ACTTCCTTCC CAGACCTTCA ACCCCAAGGT ATTTGATCTA TAATGATAGA TAAACTACTG
  Y
  TGTAAGTTAC TTTATGCATG AGCATTGAAT ATGTGAGGTA GGACCAATCA GTGTTTTGTT
  AACTAAAGGT GGAAGGGAGA TAGCAGTATC AGGCAGGAAG GGAAGAGTCA CAGAGCTAGT
  GGGATACATG CCTGCCAGTC AGTGGGCTGG GAGCCTGCCT GAGTTATCTC CTCCTATGCT
  AACTGTAGTT CTGCAAGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39614582	mCV25216379	ABI	CRAMUS_MOUSE	f	SNP	T	T	C					C		C
ss50474154	NES13692179	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	C		C	C	C	C	C	C	T	C	C
ss147478358	ENSMUSSNP3973132	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29773482					SNP	T	T	C	C	C	T	C	C	C	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50474154	NES13692179	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:74627834 () rs orientation: forward

Symbol	Name	Function Class
1700120E14Rik	RIKEN cDNA 1700120E14 gene	915 bp downstream
Myo5b	myosin VB	within coordinates