rs29773559 SNP Detail

Summary

• ID
  rs29773559
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:115079467 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GGTGTTCTAA TAGAAAACAA TCAAAAGGTG TATTAATCTG ATATGTATTA AGGAGTGACA
  TTAAAAAAAA GTCTTCGTTT TCTGCAATTA AACAGTTGTG TTTCATAAGA GCAGAAAACT
  TTGTGTAGGG CTGGAGAGAT GGTTCAGAGG TTAAGAGAAC TGACTGCTTT TCCAGAGGTC
  CTGAGTTCAA TTCCAGGAAC CACATGGTGG CTCACAACCA TCTGTATTGG GATCTGGCGC
  CCTCTTCTGG TGTGTCTGAA GACAGCTACA GTATTCATTC ATATACATAA AATAAATCTT
  W
  AAAAAAATGT TGCCTGGTAG TGGTGGTGTA CACCTTTAAT CCCAGCACTT GGGTGGCAGA
  GGCAGTCGGA TTTCTGAGTT CAAGGCCAGC CTGGTCTACA AAGTGAGTTC CAGGACAGCC
  AGGGATATAC AGAGAAACTC TGTCTCGGGA AAAAAACAAA AACAAAAAAC AAAAAAAAAA
  AAACAAAACA CACACACACA CACACAAAAG CTCTCAAGTG CTAGTCTACA GGTGTTTTAC
  GGACTATGCA CTAACTGCTA AATCCTCCGC TGTTCCAAGA GTCATTCCGA TCTGATTTGT
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45860190	mCV25153026	ABI	CRAMUS_MOUSE	f	SNP	T	A	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29773559					SNP	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115079467 () rs orientation: forward

Symbol	Name	Function Class
2210016L21Rik	RIKEN cDNA 2210016L21 gene	746 bp upstream
Cpgi16342	CpG island 16342	649 bp proximal
Rr399277	regulatory region 399277	640 bp upstream
Rr618069	regulatory region 618069	46 bp distal
Rr618070	regulatory region 618070	297 bp proximal
Rr618071	regulatory region 618071	774 bp proximal
Tssr48192	transcription start site region 48192	768 bp upstream
Tssr48193	transcription start site region 48193	808 bp upstream