rs29773838 SNP Detail

Summary

• ID
  rs29773838
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:18002076 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAATACAAT GTTATCTAGT
  CCTATCTAAC TTTTACATGT TACAATTTCA GGAATAAAAC TTTCCAGCAT AATAAATATA
  AAGTCACATG AACTTTGATA ATGAGTATAT CTACATACCT TCTTTGCATT TGCCAATGTC
  TAGCACACCA TAAGATGTAC AGTTATTGGA GATTACTTTT TCAGTGCAGA AACAATGGTT
  R
  TCTGGATTCT GGAGGGGTGA TGCAAAGGCA TTGGCTGGAA GAACAAATCT GTACACGGGG
  ATTCCTTTAA GGTCGATTTC AGATCCGAAC ACAGCGTAGA TAGACCTACA TGGGTTTTCA
  AAAAAAGAGC TTCATACTAG AGAACTCAAT CCTGTTCTGG ATATCTGATT CTTTTTGATT
  AAACTAATTT ATATTTTTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45860389	mCV23268451	ABI	CRAMUS_MOUSE	f	SNP		A	G				G		G
ss51687569	NES14753951	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	A	G		G		G	G	G	G	G	G	G
ss147966723	ENSMUSSNP6756262	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29773838					SNP	A	A	G	G	A	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51687569	NES14753951	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:18002076 () rs orientation: forward

Symbol	Name	Function Class
Cd36	CD36 molecule	within coordinates
Tssr50146	transcription start site region 50146	1603 bp upstream
Tssr50147	transcription start site region 50147	1496 bp upstream
Tssr50148	transcription start site region 50148	1470 bp upstream
Tssr50149	transcription start site region 50149	1422 bp upstream
Tssr50150	transcription start site region 50150	1396 bp upstream
Tssr50151	transcription start site region 50151	1377 bp upstream
Tssr50152	transcription start site region 50152	78 bp upstream
Tssr50153	transcription start site region 50153	10 bp upstream
Tssr50154	transcription start site region 50154	within coordinates