rs29773875 SNP Detail

Summary

• ID
  rs29773875
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:92112882 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAATGATTGG CAGAAAAATC TAGATATTAA AACTGAGCTA
  TGAGGCCAAC AGAATGTCTT AGCAGGTAAA GGTAGTTATC ACAAAGCCTA ATATATGTAT
  R
  TATATATATA TATATATATA TACACATACA CACACATATA TAGCTTTAAA ATATATTCTT
  ACTGTTTTGT AGATTCCCCA CAGATGAAAA CATCAAAAG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45860786	mCV23365902	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	G	A
ss148827575	ENSMUSSNP6196274	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29773875					SNP	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:92112882 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16049	CpG island 16049	1622 bp distal
Rchy1	ring finger and CHY zinc finger domain containing 1	1955 bp upstream
Rr125457	regulatory region 125457	882 bp distal
Rr367874	regulatory region 367874	1125 bp downstream
Thap6	THAP domain containing 6	within coordinates
Tssr47275	transcription start site region 47275	1696 bp downstream
Tssr47276	transcription start site region 47276	1664 bp downstream
Tssr51834	transcription start site region 51834	1918 bp upstream
Tssr51835	transcription start site region 51835	1886 bp upstream