rs29773985 SNP Detail

Summary

• ID
  rs29773985
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:77279400 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAAC ACAAAACTAA GAAGGCAGTG
  M
  TTGTGAAAAG AGCTGCCCTT TATAC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	MSM/Ms	NZW/LacJ	PWD/PhJ	SM/J
ss39116942	mCV22684972	ABI	CRAMUS_MOUSE	f	SNP		C	C	A		C
ss49119330	NES12423672	PERLEGEN	MM_PANEL2	f	SNP	C				A	C		C		C	C
ss144701583	ENSMUSSNP5170459	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C			C			A
ss324447425	CHEV_13_77270542	CHEVERUD	SCREENING_POP	f	SNP							C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	MSM/Ms	NZW/LacJ	PWD/PhJ	SM/J
rs29773985					SNP	C	C	C	A	A	C	C	C	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49119330	NES12423672	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:77279400 () rs orientation: forward

Symbol	Name	Function Class
Rr284991	regulatory region 284991	within coordinates
Slf1	SMC5-SMC6 complex localization factor 1	within coordinates
Tssr123275	transcription start site region 123275	31 bp downstream