rs29774080 SNP Detail

Summary

• ID
  rs29774080
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:63283577 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATTT TAATGTTTCC ATAAGTCATC
  W
  AAAGATCCTG CTGAAATGCA GATTC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39117147	mCV25259523	ABI	CRAMUS_MOUSE	f	SNP	A	T	A
ss149138185	ENSMUSSNP5248876	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		A
ss324374653	CHEV_13_63237123	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29774080					SNP	A	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:63283577 () rs orientation: forward

Symbol	Name	Function Class
Aopep	aminopeptidase O	within coordinates
Gm30409	predicted gene, 30409	1250 bp downstream
Rr273239	regulatory region 273239	1024 bp proximal
Rr276922	regulatory region 276922	576 bp distal
Rr276923	regulatory region 276923	177 bp distal
Rr284650	regulatory region 284650	1777 bp distal
Rr284651	regulatory region 284651	1108 bp proximal