rs29774172 SNP Detail

Summary

• ID
  rs29774172
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:142159749 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTAGGAGC CATGGAGCCA
  TGCACTCCTG GCTGGAAGCC AGAACCACGC ACTGCCCATA TGGTGGCTTC TTGGCCACAC
  TGAAGGCAGT TGGTCCATGG GGCCTCTGGC CTCCTCTCCC TGCATTTCTC TAGCAAGGCA
  TGTGTGGAAG AGGAGACTCA TTTCTTGTTC CCCTTCTGAG TGCCTAGTAA CCACAGCTGT
  R
  CTGTTAACCT CTCGGGCATT CAATTTCTGA TGCCTTAGCC GCGTGACACT CCGAAAGATG
  ATAATTGTCA CTCTCAGGAA AGGGTAGACG AGAGGCGAAG GACACTCGAA GACATTTCAG
  CTCATCAGGA AGATCTAGAA GTGTCTCAGG GACTCGTCTC AGGGGTCTAA TGCTGGTGGC
  CTGTGGAAAG AGCCTCACTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45861294	mCV24556569	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G	G
ss144587959	ENSMUSSNP4478352	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29774172					SNP	A	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:142159749 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16942	CpG island 16942	1353 bp distal
Sdk1	sidekick cell adhesion molecule 1	Intron