rs29775005 SNP Detail

Summary

• ID
  rs29775005
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:65516476 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGGGTGGT ACCCAAGGGG
  TAAAAGGATG TTCGGTAGAT GTGCAGTTCC AAGACATGAC CACATTTAAT CCTCATAGTG
  AGATCCTTAC GTGTATATCT TTTCCTACTT CACACATATT TACTTGGGAG CATAAATAGA
  TTATCATTTT TGTTGTTTAT TTATCCGAGA CAGTATTTCA CGGTGTAGCC CCAGGCTGAC
  Y
  TCAAAGTCAA TATCCTCCTG CCTTTGCCTT GAAAGTGTTA GGGTCACAGG ATGTGACTCC
  ATATACAAAC CCTCCAAAGA AAGCAGTGGG GACACAGGTT GGTTAGTGGA TGTGGGTGGG
  AAGAAGACTA ATTGACAACA CACACACATG TATGTATGTA TGTATGTATG TTTATGCTTA
  TGTATATATG TATATGTATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39613913	mCV24014432	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T	T
ss147312007	ENSMUSSNP4631668	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
ss325657190	CHEV_18_65543059	CHEVERUD	SCREENING_POP	f	SNP						C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29775005					SNP	C	C	C	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:65516476 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Alpk2	alpha-kinase 2			Intron
				Noncoding-Transcript-Variant
D18Mit182	DNA segment, Chr 18, Massachusetts Institute of Technology 182			1801 bp proximal
Rr539523	regulatory region 539523			332 bp distal
Tssr151597	transcription start site region 151597			1332 bp downstream
Tssr151598	transcription start site region 151598			1307 bp downstream
Tssr151599	transcription start site region 151599			693 bp downstream
Tssr153696	transcription start site region 153696			1725 bp upstream
Tssr153697	transcription start site region 153697			1486 bp upstream
Tssr153698	transcription start site region 153698			874 bp upstream