rs29775692 SNP Detail

Summary

• ID
  rs29775692
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:59306841 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATGCATTT CCTCAGTCAC
  ACTAGCCACA TTTCAAGTGC CCCCAAATCT TACGTGGTCA TTGTTTACCA TGAAAGTGAT
  AAAGAATATT CCTTATAGCA GAAGTCTATG AGGTATCAGT TACATGAAAA TTAAAATGGC
  GAAAATAGAT GGAAAACCAG AAGAGTCCTG CTTGCTTGGC TAGCTTTATT TTCTAGTTGA
  R
  ATTCGACATT AAAAAGAATA TGATGGTCTT CATTCCCATG AATCTCAGGG CAAGCCCCAG
  ACGTGGAAAG GAAAGGAGGT TCACTGTCAA ACAGAAGCAA CCTTTAGTTA GCTGGGCTTC
  TGTACAGCCA ATGACTGGCG TGGAAAGAAC CGTCCTGCAA TGATTCCAGG CAGACTTACT
  GTTCCAGAGA TGGTGCCAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39615928	mCV23241558	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	A
ss147209017	ENSMUSSNP4410664	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29775692					SNP	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:59306841 () rs orientation: forward

Symbol	Name	Function Class
Chsy3	chondroitin sulfate synthase 3	1571 bp upstream
Cpgi10086	CpG island 10086	895 bp proximal
Gm54033	predicted gene, 54033	within coordinates
Gm58413	predicted gene, 58413	within coordinates
Rr538516	regulatory region 538516	1391 bp proximal
Tssr151236	transcription start site region 151236	1564 bp upstream
Tssr151237	transcription start site region 151237	1639 bp upstream
Tssr151238	transcription start site region 151238	1703 bp upstream