rs29776025 SNP Detail

Summary

• ID
  rs29776025
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129444944 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGCA TGCTGTGAAG CGCTCTAGCA
  Y
  ACCCCCAACC CTTCGTATGC CATTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45363215	mCV24477442	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C	C
ss147587900	ENSMUSSNP705477	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
ss320505112	CHEV_2_129428760	CHEVERUD	SCREENING_POP	f	SNP						C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29776025					SNP	T	T	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129444944 () rs orientation: forward

Symbol	Name	Function Class
Rr564955	regulatory region 564955	1449 bp distal
Rr564956	regulatory region 564956	575 bp proximal
Rr564957	regulatory region 564957	1045 bp proximal
Sirpa	signal-regulatory protein alpha	within coordinates
Tssr20144	transcription start site region 20144	1482 bp downstream
Tssr20145	transcription start site region 20145	807 bp downstream
Tssr20146	transcription start site region 20146	706 bp upstream