About   Help   FAQ
rs29777144 SNP Detail
Summary
  • ID
    rs29777144
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr13:58296718 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          GGAGGATGGA GAAGCTGACA GAATACAGTG GGTTACAGAA
    CGAACAGGGA TGATCCTGGG ACTGTCAGGG AAGTCAAGGA AACAAGTTTA ATTCAACGGA
    R
    GTACTCAAAA GAAGTTTAAG CCATGGGGTG AAAGAGGCAT TTAACTCCCT GAAATAAATC
    CTGGCGCTGC AGTTTTGACT CCCATTTGCT TACTTTCCT                       
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
C57BL/6J
DBA/2J
FVB/NJ
KK/HlJ
LG/J
NOD/ShiLtJ
NZW/LacJ
SM/J
WSB/EiJ
ss39116395 mCV24562268 ABI CRAMUS_MOUSE f SNP G G A
ss61812780 NES17745634 PERLEGEN MM_PANEL2 f SNP G G G G G G A G A G G G
ss149066086 ENSMUSSNP1795978 ENSEMBL ENSEMBL_Sanger f SNP G A
ss324352927 CHEV_13_58250265 CHEVERUD SCREENING_POP f SNP A G
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
C57BL/6J
DBA/2J
FVB/NJ
KK/HlJ
LG/J
NOD/ShiLtJ
NZW/LacJ
SM/J
WSB/EiJ
rs29777144 SNP G G G G G G G A G A A G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss61812780 NES17745634 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr13:58296718 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
1700066J03Rik RIKEN cDNA 1700066J03 gene within coordinates
Cpgi5721 CpG island 5721 132 bp distal
Gm48295 predicted gene, 48295 within coordinates
Rr480978 regulatory region 480978 359 bp distal
Rr480979 regulatory region 480979 within coordinates
Rr480980 regulatory region 480980 203 bp proximal
Tssr120063 transcription start site region 120063 380 bp downstream
Tssr120064 transcription start site region 120064 356 bp downstream
Tssr120065 transcription start site region 120065 338 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
12/17/2024
MGI 6.24
The Jackson Laboratory