rs29777176 SNP Detail

Summary

• ID
  rs29777176
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:129915860 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAGC CTGTCTAGGG AAAAGGTCAC
  R
  TTTCAGAGTC CTCTCCCCGA GTGCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45861718	mCV25038829	ABI	CRAMUS_MOUSE	f	SNP		A					G		G
ss60840621	NES16012833	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	A	G	G		G	G	G	G		G	G	G	G		G
ss144477367	ENSMUSSNP5631615	ENSEMBL	ENSEMBL_Sanger	f	SNP		A							G
ss321692411	CHEV_5_130362889	CHEVERUD	SCREENING_POP	f	SNP												A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29777176					SNP	G	A	G	A	G	G	G	G	G	G	G	A	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60840621	NES16012833	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:129915860 () rs orientation: forward

Symbol	Name	Function Class
Chchd2	coiled-coil-helix-coiled-coil-helix domain containing 2	within coordinates
Cpgi16684	CpG island 16684	within coordinates
Rr399383	regulatory region 399383	189 bp upstream
Rr621372	regulatory region 621372	within coordinates
Rr621373	regulatory region 621373	441 bp proximal
Tssr53498	transcription start site region 53498	120 bp downstream
Tssr53499	transcription start site region 53499	269 bp downstream
Tssr53500	transcription start site region 53500	397 bp downstream
Tssr53501	transcription start site region 53501	423 bp downstream