rs29777616 SNP Detail

Summary

• ID
  rs29777616
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:103775213 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCAA AACACTGCTA AAGACTTCAG
  M
  TCTTACTCCA GATGATGCAG TTGTG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45860730	mCV24430486	ABI	CRAMUS_MOUSE	f	SNP		C	A					A		C
ss46631414	NES10402682	PERLEGEN	MM_PANEL2	f	SNP	C		A	A	A	C	C		C	C	C	A		C	C	C	C		C
ss148947305	ENSMUSSNP5914635	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A							C
ss321633158	CHEV_5_104056366	CHEVERUD	SCREENING_POP	f	SNP													C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29777616					SNP	C	C	A	A	A	C	C	A	C	C	C	A	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46631414	NES10402682	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:103775213 () rs orientation: forward

Symbol	Name	Function Class
Slc10a6	solute carrier family 10 (sodium/bile acid cotransporter family), member 6	within coordinates
Tssr52162	transcription start site region 52162	1889 bp downstream
Tssr52163	transcription start site region 52163	1932 bp downstream