rs29777625 SNP Detail

Summary

• ID
  rs29777625
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:35202018 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGGG ATGGTGGGTT CATGTGTGCC
  Y
  ACCGTGGTCT GCAGAGAGAG CACAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss45859571	mCV24464908	ABI	CRAMUS_MOUSE	f	SNP		C	T				C
ss47678803	NES10266586	PERLEGEN	MM_PANEL2	f	SNP	C			T	T	T	C	C	C	T	C	C
ss148220981	ENSMUSSNP6085215	ENSEMBL	ENSEMBL_Sanger	f	SNP			T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs29777625					SNP	C	C	T	T	T	T	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47678803	NES10266586	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:35202018 () rs orientation: forward

Symbol	Name	Function Class
Hgfac	hepatocyte growth factor activator	within coordinates
Rr609835	regulatory region 609835	1517 bp distal
Rr609836	regulatory region 609836	1436 bp distal
Tssr45928	transcription start site region 45928	589 bp upstream
Tssr45929	transcription start site region 45929	601 bp upstream
Tssr45930	transcription start site region 45930	1809 bp upstream